PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02357.40
Common NameJCGZ_23077, LOC105647281
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 278aa    MW: 30257.9 Da    PI: 4.6182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02357.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58e-193381355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Jcr4S02357.40 33 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 81
                   67******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.6133289IPR001471AP2/ERF domain
CDDcd000186.79E-293288No hitNo description
SMARTSM003803.4E-333295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-283389IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-213390IPR016177DNA-binding domain
PRINTSPR003673.5E-83344IPR001471AP2/ERF domain
PfamPF008477.9E-123581IPR001471AP2/ERF domain
PRINTSPR003673.5E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDLTTSSVPS PSKTKRKQQH HQQQQPDDQQ VRFLGVRRRP WGRYAAEIRD PSTKERHWLG  60
TFDTAEEAAL AYDRAARSMR GYKARTNFVY SDMPPGSSVT SIISPDESQH DISALFAPSR  120
HYNNNSNNNN NNNDQNQLLF GQDCTFSASF PYGNHCGLVA AAAGDGWVVQ EGGYFEPIIA  180
STEAVAAGGS KSNNFCFSGD NIELPPLPPD VTSSSCYGSD MGHGFWDETA FFGLSEEQIN  240
GPQLSASGSY LGFDSSLSVT DTVTDGLDLG SSSSAFFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-193388359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088688.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ9M6441e-47LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A067JUQ80.0A0A067JUQ8_JATCU; Uncharacterized protein
STRINGPOPTR_0001s12820.12e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.16e-37ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]